Jupyter Mcp Server

New in v1.1.0: We are not supporting external Sandboxes (Datalayer, Kaggle, Monty, Google Colab, Modal...).

Setup details on this page

Join the conversation in our Community page - your feedback will help us prioritize features and ensure these integrations work seamlessly for your needs.

📖 Table of Contents

• Key Features
• MCP Overview
• Getting Started
• Sandbox Variants
• Best Practices
• Contributing
• Resources

🚀 Key Features

• ⚡ Real-time control: Instantly view notebook changes as they happen.
• 🔁 Smart execution: Automatically adjusts when a cell run fails thanks to cell output feedback.
• 🧠 Context-aware: Understands the entire notebook context for more relevant interactions.
• 📊 Multimodal support: Support different output types, including images, plots, and text.
• 📚 Multi-notebook support: Seamlessly switch between multiple notebooks.
• 🎨 JupyterLab integration: Enhanced UI integration like automatic notebook opening.
• 🤝 MCP-compatible: Works with any MCP client, such as Claude Desktop, Cursor, Windsurf, and more.
• 🔍 Observability: Built-in hook system with OpenTelemetry integration for tracing tool calls and kernel executions.

Compatible with any Jupyter deployment (local, JupyterHub, ...) and with Datalayer hosted Notebooks.

🔧 MCP Overview

🔧 Tools Overview

The server provides a rich set of tools for interacting with Jupyter notebooks, categorized as follows.

For more details on each tool, their parameters, and return values, please refer to the official Tools documentation.

Server and Runtime Management Tools

Multi-Notebook Management Tools

Cell Operations and Execution Tools

JupyterLab Integration

*Available only when JupyterLab mode is enabled. It is enabled by default.*

When running in JupyterLab mode, Jupyter MCP Server integrates with jupyter-mcp-tools to expose additional JupyterLab commands as MCP tools. By default, the following tools are enabled:

📚 Learn how to customize additional tools

You can now customize which tools from jupyter-mcp-tools are available using the allowed_jupyter_mcp_tools configuration parameter. This allows you to enable additional notebook operations, console commands, file management tools, and more.

# Example: Enable additional tools via command-line
jupyter lab --port 4040 --IdentityProvider.token MY_TOKEN --JupyterMCPServerExtensionApp.allowed_jupyter_mcp_tools="notebook_run-all-cells,notebook_get-selected-cell,notebook_append-execute,console_create"

For the complete list of available tools and detailed configuration instructions, please refer to the Additional Tools documentation.

📝 Prompt Overview

The server also supports prompt feature of MCP, providing a easy way for user to interact with Jupyter notebooks.

For more details on each prompt, their input parameters, and return content, please refer to the official Prompt documentation.

🏁 Getting Started

For comprehensive setup instructions—including Streamable HTTP transport, running as a Jupyter Server extension and advanced configuration—check out our documentation. Or, get started quickly with JupyterLab and STDIO transport here below.

1. Set Up Your Environment

pip install jupyterlab==4.4.1 jupyter-collaboration==4.0.2 jupyter-mcp-tools>=0.1.4 ipykernel pycrdt

[!TIP]

To confirm your environment is correctly configured:

1. Open a notebook in JupyterLab

1. Type some content in any cell (code or markdown)

1. Observe the tab indicator: you should see an "×" appear next to the notebook name, indicating unsaved changes

1. Wait a few seconds—the "×" should automatically change to a "●" without manually saving

This automatic saving behavior confirms that the real-time collaboration features are working properly, which is essential for MCP server integration.

2. Start JupyterLab

# Start JupyterLab on port 8888, allowing access from any IP and setting a token
jupyter lab --port 8888 --IdentityProvider.token MY_TOKEN --ip 0.0.0.0

[!NOTE]

If you are running notebooks through JupyterHub instead of JupyterLab as above, refer to our JupyterHub setup guide.

3. Configure Your Preferred MCP Client

Next, configure your MCP client to connect to the server. We offer two primary methods—choose the one that best fits your needs:

• **📦 Using uvx (Recommended for Quick Start):** A lightweight and fast method using uv. Ideal for local development and first-time users.
• **🐳 Using Docker (Recommended for Production):** A containerized approach that ensures a consistent and isolated environment, perfect for production or complex setups.

📦 Using uvx (Quick Start)

First, install uv:

pip install uv
uv --version
# should be 0.6.14 or higher

See more details on uv installation.

Then, configure your client:

{
  "mcpServers": {
    "jupyter": {
      "command": "uvx",
      "args": ["jupyter-mcp-server@latest"],
      "env": {
        "JUPYTER_URL": "http://localhost:8888",
        "JUPYTER_TOKEN": "MY_TOKEN",
        "ALLOW_IMG_OUTPUT": "true"
      }
    }
  }
}

🐳 Using Docker (Production)

On macOS and Windows:

{
  "mcpServers": {
    "jupyter": {
      "command": "docker",
      "args": [
        "run", "-i", "--rm",
        "-e", "JUPYTER_URL",
        "-e", "JUPYTER_TOKEN",
        "-e", "ALLOW_IMG_OUTPUT",
        "datalayer/jupyter-mcp-server:latest"
      ],
      "env": {
        "JUPYTER_URL": "http://host.docker.internal:8888",
        "JUPYTER_TOKEN": "MY_TOKEN",
        "ALLOW_IMG_OUTPUT": "true"
      }
    }
  }
}

On Linux:

{
  "mcpServers": {
    "jupyter": {
      "command": "docker",
      "args": [
        "run", "-i", "--rm",
        "-e", "JUPYTER_URL",
        "-e", "JUPYTER_TOKEN",
        "-e", "ALLOW_IMG_OUTPUT",
        "--network=host",
        "datalayer/jupyter-mcp-server:latest"
      ],
      "env": {
        "JUPYTER_URL": "http://localhost:8888",
        "JUPYTER_TOKEN": "MY_TOKEN",
        "ALLOW_IMG_OUTPUT": "true"
      }
    }
  }
}

[!TIP]

1. Port Configuration: Ensure the port in your Jupyter URLs matches the one used in the jupyter lab command. For simplified config, set this in JUPYTER_URL.

1. Server Separation: Use JUPYTER_URL when both services are on the same server, or set individual variables for advanced deployments. The different URL variables exist because some deployments separate notebook storage (DOCUMENT_URL) from kernel execution (RUNTIME_URL).

1. Authentication: In most cases, document and runtime services use the same authentication token. Use JUPYTER_TOKEN for simplified config or set DOCUMENT_TOKEN and RUNTIME_TOKEN individually for different credentials.

1. Notebook Path: The DOCUMENT_ID parameter specifies the path to the notebook the MCP client default to connect. It should be relative to the directory where JupyterLab was started. If you omit DOCUMENT_ID, the MCP client can automatically list all available notebooks on the Jupyter server, allowing you to select one interactively via your prompts.

1. Image Output: Set ALLOW_IMG_OUTPUT to false if your LLM does not support mutimodel understanding.

For detailed instructions on configuring various MCP clients—including Claude Desktop, VS Code, Cursor, Cline, and Windsurf — see the Clients documentation.

🧩 Sandbox Variants

By default, code executes through the code-sandboxes jupyter variant against

a Jupyter Server (SANDBOX_VARIANT=jupyter). Setting SANDBOX_VARIANT to any

other value uses another code-sandboxes

engine via the sandbox's plain kernel client when the selected variant exposes

one, so the same notebook tools can run code on additional backends.

Sandbox features are provided by the optional jupyter_mcp_sandboxes extension.

To expose sandbox lifecycle tools (launch_sandbox, list_sandboxes,

use_sandbox, terminate_sandbox) or run any non-jupyter sandbox variant,

install it with pip install jupyter_mcp_sandboxes.

1. Jupyter Server

The default engine. Point the server at a running Jupyter Server:

pip install jupyter-mcp-server

"env": {
  "JUPYTER_URL": "http://localhost:8888",
  "JUPYTER_TOKEN": "MY_TOKEN"
}

2. JupyterHub

JupyterHub uses the same jupyter engine, targeting a user's single-user server.

Authenticate with a JupyterHub API token that has the access:servers scope:

"env": {
  "RUNTIME_URL": "https://your-jupyterhub.domain/user/",
  "RUNTIME_TOKEN": "your-jupyterhub-api-token",
  "DOCUMENT_URL": "https://your-jupyterhub.domain/user/",
  "DOCUMENT_TOKEN": "your-jupyterhub-api-token"
}

See the JupyterHub setup guide for full details.

3. Datalayer

Execute on the Datalayer cloud runtime with GPU support

and persistence:

pip install "jupyter-mcp-server[datalayer]"

"env": {
  "SANDBOX_VARIANT": "datalayer",
  "RUNTIME_URL": "https://prod1.datalayer.run",
  "RUNTIME_TOKEN": "your-datalayer-token",
  "SANDBOX_ENVIRONMENT": "python-cpu-env"
}

4. Kaggle

Execute against Kaggle. By default, when no runtime URL/channels are provided,

the server uses the transparent Kaggle batch path from code-sandboxes.

If runtime values are provided, it uses Kaggle interactive kernel mode.

pip install "jupyter-mcp-server[kaggle]"

"env": {
  "SANDBOX_VARIANT": "kaggle",
  "KAGGLE_API_TOKEN": "...",
  "SANDBOX_GPU": "T4"
}

To force interactive runtime mode, provide RUNTIME_URL and either:

• KAGGLE_API_TOKEN / RUNTIME_TOKEN (create kernel), or
• RUNTIME_ID / RUNTIME_CHANNELS_URL (connect existing kernel).

Supported Kaggle accelerator values include:

NvidiaTeslaP100, NvidiaTeslaT4, NvidiaTeslaT4Highmem, NvidiaL4,

NvidiaL4X1, NvidiaTeslaA100, NvidiaH100, and NvidiaRtxPro6000.

Aliases such as P100 and T4 are accepted.

Note: Kaggle free-tier availability usually includes P100 and T4. Other

accelerators are commonly restricted to specific competitions or internal

Kaggle workloads.

5. Google Colab

Execute against a Google Colab runtime. Install the extra and provide the values

from an active Colab notebook session:

pip install "jupyter-mcp-server[colab]"

"env": {
  "SANDBOX_VARIANT": "colab",
  "RUNTIME_URL": "https://8080-m-s-kkb-...-d.us-east1-0.prod.colab.dev",
  "RUNTIME_ID": "a1b2c3d4-....",
  "RUNTIME_PROXY_TOKEN": "ya29...."
}

The proxy token (colab-runtime-proxy-token) is short-lived; refresh it when it

expires.

You can also pass RUNTIME_CHANNELS_URL with the Colab channels WebSocket URL

and let the server derive RUNTIME_URL and RUNTIME_ID.

6. Monty

Execute in Monty, a secure in-process Python

interpreter — ideal for short, safe LLM snippets. No credentials required.

pip install "jupyter-mcp-server[monty]"

"env": {
  "SANDBOX_VARIANT": "monty"
}

Monty supports only a subset of Python; third-party libraries and rich display

outputs are not available.

7. Modal

Execute in a Modal cloud sandbox. Install the

extra and configure Modal credentials:

pip install "jupyter-mcp-server[modal]"
modal token new

For local development, modal token new is usually enough because the Modal SDK

loads credentials from ~/.modal.toml.

If you run in CI/CD, containers, or hosted runners, set both environment

variables below.

"env": {
  "SANDBOX_VARIANT": "modal",
  "MODAL_TOKEN_ID": "ak-...",
  "MODAL_TOKEN_SECRET": "as-..."
}

Why both variables? Modal uses a token pair for environment-based auth:

• MODAL_TOKEN_ID: public token identifier.
• MODAL_TOKEN_SECRET: secret half paired with that id.

Providing only one is insufficient for authentication.

If needed, export both values from your local Modal config:

python -  You can also select the engine on the command line with
> `--sandbox-variant`, `--runtime-proxy-token`, and `--sandbox-environment`.

## 🧪 Testing

Run the test suite:

pytest tests/

Required environment variables for tests:

- None for the default local suite.

Optional environment variables:

- `TEST_MCP_SERVER`: `true`/`false` toggle for standalone MCP server mode tests (default `true`).
- `TEST_JUPYTER_SERVER`: `true`/`false` toggle for Jupyter extension mode tests (default `true`).
- `DATALAYER_API_KEY`: required only for Datalayer cloud smoke/integration tests.
- `DATALAYER_RUN_URL`: optional custom Datalayer runtime URL for datalayer engine tests.
- `SANDBOX_ENVIRONMENT`: optional cloud environment override (for example `ai-agents-env`).

## ✅ Best Practices

- Interact with LLMs that supports multimodal input (like Gemini 2.5 Pro) to fully utilize advanced multimodal understanding capabilities.
- Use a MCP client that supports returning image data and can parse it (like Cursor, Gemini CLI, etc.), as some clients may not support this feature.
- Break down complex task (like the whole data science workflow) into multiple sub-tasks (like data cleaning, feature engineering, model training, model evaluation, etc.) and execute them step-by-step.
- Provide clearly structured prompts and rules (👉 Visit our [Prompt Templates](prompt/README.md) to get started)
- Provide as much context as possible (like already installed packages, field explanations for existing datasets, current working directory, detailed task requirements, etc.).

## 🤝 Contributing

We welcome contributions of all kinds! Here are some examples:

- 🐛 Bug fixes
- 📝 Improvements to existing features
- 🔧 New feature development
- 📚 Documentation improvements and prompt templates

For detailed instructions on how to get started with development and submit your contributions, please see our [**Contributing Guide**](CONTRIBUTING.md).

### Our Contributors

[![Contributors](https://contrib.rocks/image?repo=datalayer/jupyter-mcp-server)](https://github.com/datalayer/jupyter-mcp-server/graphs/contributors)

## 📚 Resources

Looking for blog posts, videos, or other materials about Jupyter MCP Server?

👉 Visit the [**Resources section**](https://jupyter-mcp-server.datalayer.tech/resources) in our documentation for more!

[![Star History Chart](https://api.star-history.com/svg?repos=datalayer/jupyter-mcp-server&type=Date)](https://star-history.com/#datalayer/jupyter-mcp-server&type=Date)

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