PrimeKG to Neo4j

This project imports the Precision Medicine Knowledge Graph (PrimeKG) into a Neo4j database for data analysis and exploration.

Overview

PrimeKG is a comprehensive biomedical knowledge graph that integrates 20 high-quality biomedical resources to describe 17,080 diseases with over 4 million relationships across ten major biological scales.

This project:

1. Downloads and processes PrimeKG data

2. Imports the data into a Neo4j graph database

3. Provides tools for querying and analyzing the data

Project Structure

primekg-mcp/
├── config/           # Configuration files
├── data/             # Data files (PrimeKG data will be stored here)
├── docs/             # Documentation
├── scripts/          # Utility scripts for data processing
├── src/              # Source code
│   ├── db/           # Database connection and queries
│   ├── etl/          # Data extraction, transformation, loading
│   └── utils/        # Utility functions
└── tests/            # Test files

Setup Instructions

(Setup instructions will be added as the project progresses)

Usage

(Usage instructions will be added as the project progresses)

License

(License information will be added)